Package: compareGroups 4.9.1

compareGroups: Descriptive Analysis by Groups

Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.

Authors:Isaac Subirana [aut, cre], Joan Salvador [ctb]

compareGroups_4.9.1.tar.gz
compareGroups_4.9.1.zip(r-4.5)compareGroups_4.9.1.zip(r-4.4)compareGroups_4.9.1.zip(r-4.3)
compareGroups_4.9.1.tgz(r-4.4-any)compareGroups_4.9.1.tgz(r-4.3-any)
compareGroups_4.9.1.tar.gz(r-4.5-noble)compareGroups_4.9.1.tar.gz(r-4.4-noble)
compareGroups_4.9.1.tgz(r-4.4-emscripten)compareGroups_4.9.1.tgz(r-4.3-emscripten)
compareGroups.pdf |compareGroups.html✨
compareGroups/json (API)
NEWS

# Install 'compareGroups' in R:
install.packages('compareGroups', repos = c('https://isubirana.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/isubirana/comparegroups/issues

Datasets:
  • SNPs - SNPs in a case-control study
  • regicor - REGICOR cross-sectional data

On CRAN:

comparegroupsdescriptive-statisticsplotreporttable

9.73 score 34 stars 1 packages 380 scripts 5.5k downloads 20 mentions 30 exports 120 dependencies

Last updated 18 days agofrom:7e1b0a0bf2. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 05 2024
R-4.5-winOKNov 05 2024
R-4.5-linuxOKNov 05 2024
R-4.4-winOKNov 05 2024
R-4.4-macOKNov 05 2024
R-4.3-winOKNov 05 2024
R-4.3-macOKNov 05 2024

Exports:cGroupsGUIcGroupsWUIcompareGroupscompareSNPscreateTabledescrTableexport2csvexport2htmlexport2latexexport2latex.cbind.createTableexport2latex.createTableexport2mdexport2pdfexport2wordexport2xlsgetResultsmissingTablepadjustCompareGroupsprint.compareSNPsprint.createTableprint.summary.compareGroupsprint.summary.createTableprintTableradiographreportstrataTablesummary.compareGroupssummary.createTablevarinfovarinfo.compareGroups

Dependencies:askpassbackportsbase64encbitbit64bootbroombslibBWStestcachemchronclicliprcodetoolscolorspacecpp11crayondata.tabledigestdplyrevaluatefansifarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverforcatsforeachfsgdtoolsgenericsglmnetgluegmpHardyWeinberghavenhighrhmshtmltoolsiteratorsjomojquerylibjsonlitekableExtraknitrkSampleslabelinglatticelifecyclelme4magrittrMASSMatrixmemoisemicemimeminqamitmlmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivofficeropensslordinalpanpillarpkgconfigPMCMRplusprettyunitsprogresspurrrR6raggrappdirsRColorBrewerRcppRcppEigenreadrrlangrmarkdownRmpfrrpartRsolnprstudioapisassscalesshapestringistringrSuppDistssurvivalsvglitesyssystemfontstextshapingtibbletidyrtidyselecttinytextruncnormtzdbucminfutf8uuidvctrsviridisLitevroomwithrwritexlxfunxml2yamlzip

compareGroups 4.0: Descriptives by groups

Isaac Subirana, Joan Vila and Héctor Sanz

Rendered fromcompareGroups_vignette.Rmdusingknitr::rmarkdownon Nov 05 2024.

Last update: 2024-09-13
Started: 2018-01-24

Readme and manuals

Help Manual

Help pageTopics
Descriptive analysis by groupscompareGroups-package
Graphical user interface based on tcltk toolscGroupsGUI
Web User Interface based on Shiny tools.cGroupsWUI
Descriptives by groupscompareGroups plot.compareGroups print.compareGroups print.summary.compareGroups summary.compareGroups update.compareGroups
Summarise genetic data by groups.compareSNPs print.compareSNPs
Table of descriptives by groups: bivariate tablecreateTable plot.createTable print.createTable print.summary.createTable summary.createTable
Perform descriptives and build the bivariate table.descrTable
Exporting descriptives table to plain text (CSV) formatexport2csv
Exporting descriptives table to HTML formatexport2html
Exporting descriptives table to LaTeX formatexport2latex export2latex.cbind.createTable export2latex.createTable
Exporting descriptives table to Markdown formatexport2md
Exports tables to PDF files.export2pdf
Exports tables to Word files.export2word
Exporting descriptives table to Exel format (.xlsx or .xls)export2xls
Easily retrieve summary data as R-objects (matrices and vectors).getResults
Table of missingness counts by groups.missingTable
Update p values according multiple comparisonspadjustCompareGroups
'Nice' table format.printTable
Lists the values in the data set.radiograph
REGICOR cross-sectional dataregicor
Report of descriptive tables and plots.report
SNPs in a case-control studySNPs
Stratify descriptive table in stratas.strataTable
Variable names and labels extractionvarinfo varinfo.compareGroups varinfo.createTable